Imports
Biostrings (>= 2.33.4), pwalign, DBI (>= 0.7), RSQLite (>=
0.11.4), GenomeInfoDb (>= 1.1.3), GenomicRanges (>= 1.23.16),
Seqinfo (>= 0.99.2), rtracklayer (>= 1.25.5), XVector (>=
0.5.4), GenomicAlignments (>= 1.1.9), methods, S4Vectors (>=
0.13.13), IRanges (>= 2.5.27), readr (>= 0.2.2), BiocGenerics,
tools, parallel, reshape2 (>= 1.4.1), ggplot2 (>= 2.1.0),
poweRlaw (>= 0.60.3), annotate (>= 1.50.0), GO.db (>= 3.3.0),
R.utils (>= 2.3.0), KEGGREST (>= 1.14.0)
Suggests
Gviz (>= 1.7.4), BiocStyle, knitr, rmarkdown, testthat,
BSgenome.Drerio.UCSC.danRer10, BSgenome.Hsapiens.UCSC.hg38,
TxDb.Drerio.UCSC.danRer10.refGene, BSgenome.Hsapiens.UCSC.hg19,
BSgenome.Ggallus.UCSC.galGal3