Imports
ape, Biostrings, data.table, DECIPHER, DESeq2, dplyr, edgeR,
flextable, ggalluvial, ggnewscale, ggplot2, ggpubr, ggraph,
ggrepel, ggridges, ggtree, ggtreeExtra, graphics, grDevices,
igraph, limma, matrixStats, methods, microbiome, officer, grid,
reshape2, patchwork, phangorn, phyloseq, randomForest,
RColorBrewer, rlang, S4Vectors, scales, stats, tibble, tidyr,
SummarizedExperiment, TreeSummarizedExperiment, utils, msa,
xml2, ggstar
Suggests
Biobase, mia, BiocGenerics, magrittr, BiocManager, cluster,
devtools, DT, e1071, foreach, ggtext, intergraph, knitr,
optparse, plyr, preprocessCore, qpdf, remotes, rmarkdown,
ShortRead, testthat (>= 3.0.0), vegan, viridis