Imports
AnnotationDbi, annotatr, Biobase, BiocParallel,
clusterProfiler, data.table, DESeq2, diffcoexp, DOSE, dplyr,
DT, edgeR, enrichit, enrichplot, FactoInvestigate, FactoMineR,
fastcluster, GenomicFeatures, GenomicRanges, ggplot2, ggrepel,
ggridges, GO.db, graphics, grDevices, heatmaply, knitr, limma,
magrittr, Matrix, matrixStats, miRBaseVersions.db, MKinfer,
NOISeq, plyr, ReactomePA, rlang, rmarkdown, ROCR, stats,
stringr, SummarizedExperiment, tidyr, topGO, tximport, utils,
txdbmaker, WGCNA
Suggests
BiocGenerics, biomaRt, EnhancedVolcano, ggupset, naivebayes,
optparse, org.Hs.eg.db, org.Mm.eg.db, PerformanceAnalytics,
reshape2, testthat (>= 3.0.0)