Imports
BiocGenerics, Biostrings, BSgenome, data.table, dplyr,
GenomicRanges, ggplot2, here, IRanges, ggdendro, magrittr,
methods, plyranges, rlang, S4Vectors, Seqinfo, stats, stringr,
SummarizedExperiment, tibble, tidyr, utils, VariantAnnotation
Suggests
binom, BiocManager, BiocStyle, bs4Dash,
BSgenome.Hsapiens.UCSC.hg38, BSgenome.Mmusculus.UCSC.mm10, car,
colorspace, dendsort, doBy, DT, ExperimentHub, fmsb, fs,
ggrepel, gtools, htmltools, httr, knitr, lme4, magick,
MutSeqRData, openxlsx, packcircles, patchwork, RColorBrewer,
reticulate, rmarkdown, scales, shiny, testthat (>= 3.0.0),
trackViewer, withr, yaml, xml2