Imports
AnnotationDbi, AnnotationHub, dplyr, GenomicFeatures (>=
1.61.4), GenomicRanges (>= 1.61.1), Seqinfo, ggplot2 (>=
3.5.0), IRanges, methods, readr, regioneR, reshape2, rlang,
rtracklayer (>= 1.69.1), S4Vectors (>= 0.23.10), stats, utils
Suggests
GenomeInfoDb, BiocStyle, devtools, knitr, org.Dm.eg.db,
org.Gg.eg.db, org.Hs.eg.db, org.Mm.eg.db, org.Rn.eg.db,
rmarkdown, roxygen2, testthat,
TxDb.Dmelanogaster.UCSC.dm3.ensGene,
TxDb.Dmelanogaster.UCSC.dm6.ensGene,
TxDb.Drerio.UCSC.danRer10.refGene,
TxDb.Drerio.UCSC.danRer11.refGene,
TxDb.Ggallus.UCSC.galGal5.refGene,
TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Hsapiens.UCSC.hg38.knownGene,
TxDb.Mmusculus.UCSC.mm9.knownGene,
TxDb.Mmusculus.UCSC.mm10.knownGene,
TxDb.Mmusculus.UCSC.mm39.knownGene,
TxDb.Rnorvegicus.UCSC.rn4.ensGene,
TxDb.Rnorvegicus.UCSC.rn5.refGene,
TxDb.Rnorvegicus.UCSC.rn6.refGene,
TxDb.Rnorvegicus.UCSC.rn7.refGene