Imports
AnnotationDbi, aplot, bsseq, BiocGenerics, Biostrings, boot,
dplyr, enrichplot, IRanges, GenomeInfoDb, GenomicRanges,
GenomicFeatures, ggplot2, graphics, grDevices, magrittr,
methods, plotrix, parallel, RColorBrewer, rlang, RSQLite,
rtracklayer, S4Vectors, scales, stats, SummarizedExperiment,
tibble, tidyselect, tidyr, utils, yulab.utils (>= 0.2.0), grid
Suggests
ape, BSgenome, BSgenome.Hsapiens.UCSC.hg38, clusterProfiler,
data.table, GEOmetadb, GEOquery, gggenes, ggimage, ggiraph,
ggplotify, ggtree, gginnards, gridBase, gtools, ggupset,
ggVennDiagram, JASPAR2024, knitr, org.Hs.eg.db, prettydoc,
ReactomePA, rmarkdown, testthat, TFBSTools,
TxDb.Hsapiens.UCSC.hg38.knownGene, universalmotif