Imports
methods, grDevices, stringr, parallel, BiocGenerics, S4Vectors
(>= 0.9.25), IRanges, GenomeInfoDb, GenomicRanges, Biostrings,
BSgenome, rtracklayer, VariantAnnotation, BiocParallel,
motifStack, Gviz, matrixStats, TFMPvalue, SummarizedExperiment,
pwalign, DT, bsicons, BiocFileCache, biomaRt, bslib, shiny,
vroom
Suggests
BSgenome.Hsapiens.UCSC.hg19,
SNPlocs.Hsapiens.dbSNP155.GRCh37, knitr, rmarkdown,
BSgenome.Drerio.UCSC.danRer7, BiocStyle,
BSgenome.Hsapiens.1000genomes.hs37d5,
BSgenome.Hsapiens.UCSC.hg19.masked,
BSgenome.Hsapiens.NCBI.GRCh38,
BSgenome.Hsapiens.UCSC.hg38.masked, BSgenome.Hsapiens.UCSC.hg38