Imports
Biostrings (>= 2.46.0), foreach (>= 1.5.1), GenomicRanges (>=
1.30.3), Rbowtie (>= 1.18.0), ShortRead (>= 1.36.1), tibble (>=
3.1.2), BiocParallel (>= 1.12.0), cowplot (>= 0.9.4),
data.table (>= 1.14.0), digest (>= 0.6.27), doParallel (>=
1.0.16), dplyr (>= 1.0.6), factoextra (>= 1.0.7), FactoMineR
(>= 1.41), ggplot2 (>= 4.0.2), IRanges (>= 2.12.0), parallel
(>= 3.4.4), reshape2 (>= 1.4.4), rtracklayer (>= 1.38.3),
stringr (>= 1.4.0), stats (>= 3.4.4), methods, S4Vectors, readr
Suggests
benchmarkme (>= 0.6.0), DESeq2 (>= 1.18.1), GenomeInfoDb (>=
1.14.0), gginnards (>= 0.0.2), qqman (>= 0.1.8), rmarkdown,
BiocStyle, knitr, testthat, UpSetR (>= 1.4.0), venneuler,
R.utils, bigreadr, vroom