phylosamp

Documentation

[{"label":"phylosamp.html","section":"","type":"","url":"https://cran.r-project.org/web/packages/phylosamp/refman/phylosamp.html"},{"label":"phylosamp.pdf","section":"","type":"","url":"https://cran.r-project.org/web/packages/phylosamp/phylosamp.pdf"},{"label":"Estimating the linkage false discovery rate from sample size","section":"","type":"","url":"https://cran.r-project.org/web/packages/phylosamp/vignettes/L1_FalseDiscoveryRate.html"},{"label":"source","section":"","type":"","url":"https://cran.r-project.org/web/packages/phylosamp/vignettes/L1_FalseDiscoveryRate.Rmd"},{"label":"R code","section":"","type":"","url":"https://cran.r-project.org/web/packages/phylosamp/vignettes/L1_FalseDiscoveryRate.R"},{"label":"Estimating sample size for transmission linkage from the false discovery rate","section":"","type":"","url":"https://cran.r-project.org/web/packages/phylosamp/vignettes/L2_SampleSize.html"},{"label":"source","section":"","type":"","url":"https://cran.r-project.org/web/packages/phylosamp/vignettes/L2_SampleSize.Rmd"},{"label":"R code","section":"","type":"","url":"https://cran.r-project.org/web/packages/phylosamp/vignettes/L2_SampleSize.R"},{"label":"Estimating the sensitivity and specificity of a linkage criteria","section":"","type":"","url":"https://cran.r-project.org/web/packages/phylosamp/vignettes/L3_SensitivitySpecificity.html"},{"label":"source","section":"","type":"","url":"https://cran.r-project.org/web/packages/phylosamp/vignettes/L3_SensitivitySpecificity.Rmd"},{"label":"R code","section":"","type":"","url":"https://cran.r-project.org/web/packages/phylosamp/vignettes/L3_SensitivitySpecificity.R"},{"label":"Illustrative examples for evaluating transmission linkage","section":"","type":"","url":"https://cran.r-project.org/web/packages/phylosamp/vignettes/L4_IllustrativeExamples.html"},{"label":"source","section":"","type":"","url":"https://cran.r-project.org/web/packages/phylosamp/vignettes/L4_IllustrativeExamples.Rmd"},{"label":"R code","section":"","type":"","url":"https://cran.r-project.org/web/packages/phylosamp/vignettes/L4_IllustrativeExamples.R"},{"label":"Estimating bias in observed variant prevalence","section":"","type":"","url":"https://cran.r-project.org/web/packages/phylosamp/vignettes/V1_CoefficientDetectionBias.html"},{"label":"source","section":"","type":"","url":"https://cran.r-project.org/web/packages/phylosamp/vignettes/V1_CoefficientDetectionBias.Rmd"},{"label":"R code","section":"","type":"","url":"https://cran.r-project.org/web/packages/phylosamp/vignettes/V1_CoefficientDetectionBias.R"},{"label":"Estimating the sample size needed for variant monitoring (cross-sectional sampling)","section":"","type":"","url":"https://cran.r-project.org/web/packages/phylosamp/vignettes/V2_SampleSizeCrossSectional.html"},{"label":"source","section":"","type":"","url":"https://cran.r-project.org/web/packages/phylosamp/vignettes/V2_SampleSizeCrossSectional.Rmd"},{"label":"R code","section":"","type":"","url":"https://cran.r-project.org/web/packages/phylosamp/vignettes/V2_SampleSizeCrossSectional.R"}]

Reference manual: phylosamp.html , phylosamp.pdf Vignettes: Estimating the linkage false discovery rate from sample size ( source , R code ) Estimating sample size for transmission linkage from the false discovery rate ( source , R code ) Estimating the sensitivity and specificity of a linkage criteria ( source , R code ) Illustrative examples for evaluating transmission linkage ( source , R code ) Estimating bias in observed variant prevalence ( source , R code ) Estimating the sample size needed for variant monitoring (cross-sectional sampling) ( source , R code ) Estimating the probability of detecting a variant (cross-sectional sampling) ( source , R code ) Estimating the sample size needed for variant monitoring (periodic sampling) ( source , R code ) Estimating the probability of detecting a variant (periodic sampling) ( source , R code ) Variant surveillance example ( source , R code )

Downloads

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Package source: phylosamp_1.0.1.tar.gz Windows binaries: r-devel: phylosamp_1.0.1.zip , r-release: phylosamp_1.0.1.zip , r-oldrel: phylosamp_1.0.1.zip macOS binaries: r-release (arm64): phylosamp_1.0.1.tgz , r-oldrel (arm64): phylosamp_1.0.1.tgz , r-release (x86_64): phylosamp_1.0.1.tgz , r-oldrel (x86_64): phylosamp_1.0.1.tgz Old sources: phylosamp archive

Linking

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