Depends
R (>= 3.5.0), BiocGenerics (>= 0.51.2), S4Vectors (>= 0.47.6),
IRanges (>= 2.37.1), Seqinfo (>= 0.99.2), GenomicRanges (>=
1.61.1), AnnotationDbi (>= 1.41.4)
Imports
methods, utils, stats, DBI, XVector, Biostrings (>= 2.77.2),
rtracklayer (>= 1.69.1)
Suggests
GenomeInfoDb, txdbmaker, org.Mm.eg.db, org.Hs.eg.db,
BSgenome, BSgenome.Hsapiens.UCSC.hg19 (>= 1.3.17),
BSgenome.Celegans.UCSC.ce11, BSgenome.Dmelanogaster.UCSC.dm3
(>= 1.3.17), FDb.UCSC.tRNAs, TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Celegans.UCSC.ce11.ensGene,
TxDb.Dmelanogaster.UCSC.dm3.ensGene (>= 2.7.1),
TxDb.Mmusculus.UCSC.mm10.knownGene (>= 3.4.7),
TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts,
TxDb.Hsapiens.UCSC.hg38.knownGene (>= 3.4.6),
SNPlocs.Hsapiens.dbSNP144.GRCh38, Rsamtools, pasillaBamSubset
(>= 0.0.5), GenomicAlignments (>= 1.15.7), ensembldb,
AnnotationFilter, RUnit, BiocStyle, knitr, markdown