pathfindR

R 패키지 메타데이터와 수집 신호를 모아 봅니다.

Packages / CRAN / pathfindR

pathfindR

v2.7.0

pathfindR

Repository CRANLicense MIT + file LICENSELifecycle activeNeeds compilation no

Package page Reference Source DOI NEWS

DOI

10.32614/CRAN.package.pathfindR

Task views

Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

Install

설치 방법을 선택하고 바로 복사합니다.

패키지 설치

install.packages("pathfindR")

Version

2.7.0

R (>= 4.3.0), pathfindR.data (>= 2.0)

License

MIT + file LICENSE

Last observed

2026-05-30

Sources

Core Signals

첫 화면에서 판단해야 할 수집 신호를 먼저 배치합니다.

Task views

Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

Supported Backends

DESCRIPTION에서 감지한 backend 관련 package입니다.

DBI

Imports

Quick Facts

기본 메타데이터를 작은 카드와 토큰으로 압축합니다.

profile

Repository

CRAN

Version

2.7.0

License

MIT + file LICENSE

Lifecycle

active

Needs compilation

Last observed

2026-05-30

CRAN: cran.r-project.org/package=pathfindR

수집 소스별 패키지 정보

1개 소스

CRAN

2.7.0

2026-05-30

License

MIT + file LICENSE

Depends

R (>= 4.3.0), pathfindR.data (>= 2.0)

Imports

DBI, AnnotationDbi, doParallel, foreach, rmarkdown, ggplot2, ggraph, ggupset, fpc, ggkegg (>= 1.4.0), grDevices, httr, igraph, R.utils, msigdbr (>= 24.1.0), knitr

Suggests

org.Hs.eg.db, testthat (>= 2.3.2), covr, mockery

Needs compilation

Lifecycle

active

Last observed

2026-05-30 10:45:11

이 패키지가 의존하는 패키지

5개 표시전체 21개

Package	Type	Spec
pathfindR.data CRAN · 2.7.0 · 2026-05-30	Depends	pathfindR.data (>= 2.0)
AnnotationDbi CRAN · 2.7.0 · 2026-05-30	Imports	AnnotationDbi
DBI CRAN · 2.7.0 · 2026-05-30	Imports	DBI
doParallel CRAN · 2.7.0 · 2026-05-30	Imports	doParallel
foreach CRAN · 2.7.0 · 2026-05-30	Imports	foreach
fpc CRAN · 2.7.0 · 2026-05-30	Imports	fpc
ggkegg CRAN · 2.7.0 · 2026-05-30	Imports	ggkegg (>= 1.4.0)
ggplot2 CRAN · 2.7.0 · 2026-05-30	Imports	ggplot2
ggraph CRAN · 2.7.0 · 2026-05-30	Imports	ggraph
ggupset CRAN · 2.7.0 · 2026-05-30	Imports	ggupset
grDevices CRAN · 2.7.0 · 2026-05-30	Imports	grDevices
httr CRAN · 2.7.0 · 2026-05-30	Imports	httr
igraph CRAN · 2.7.0 · 2026-05-30	Imports	igraph
knitr CRAN · 2.7.0 · 2026-05-30	Imports	knitr
msigdbr CRAN · 2.7.0 · 2026-05-30	Imports	msigdbr (>= 24.1.0)
R.utils CRAN · 2.7.0 · 2026-05-30	Imports	R.utils
rmarkdown CRAN · 2.7.0 · 2026-05-30	Imports	rmarkdown
covr CRAN · 2.7.0 · 2026-05-30	Suggests	covr
mockery CRAN · 2.7.0 · 2026-05-30	Suggests	mockery
org.Hs.eg.db CRAN · 2.7.0 · 2026-05-30	Suggests	org.Hs.eg.db
testthat CRAN · 2.7.0 · 2026-05-30	Suggests	testthat (>= 2.3.2)
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1 / 5

이 패키지를 쓰는 패키지

0개 표시전체 0개

Package	Type	Spec
표시할 dependency edge가 없습니다.
검색 결과가 없습니다.

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패키지 페이지

All links

Repository: CRAN
Version: 2.7.0
Collected: 2026-05-30 07:10:09
Package page: https://cran.r-project.org/web/packages/pathfindR/index.html
DOI: 10.32614/CRAN.package.pathfindR
Citation: https://cran.r-project.org/web/packages/pathfindR/citation.html
CRAN checks: https://cran.r-project.org/web/checks/check_results_pathfindR.html
NEWS: https://cran.r-project.org/web/packages/pathfindR/news/news.html
Reference HTML: https://cran.r-project.org/web/packages/pathfindR/refman/pathfindR.html
Reference PDF: https://cran.r-project.org/web/packages/pathfindR/pathfindR.pdf
Source package: https://cran.r-project.org/src/contrib/pathfindR_2.7.0.tar.gz
Archive: https://CRAN.R-project.org/src/contrib/Archive/pathfindR

In views

Omics

Page fields

Author: Ege Ulgen [cre, cph], Ozan Ozisik [aut]
BugReports: https://github.com/egeulgen/pathfindR/issues
CRAN Checks: pathfindR results
Citation: pathfindR citation info
DOI: 10.32614/CRAN.package.pathfindR
In Views: Omics
License: MIT + file LICENSE
Maintainer: Ege Ulgen <egeulgen at gmail.com>
Materials: NEWS
NeedsCompilation: no
Old Sources: pathfindR archive
Package Source: pathfindR_2.7.0.tar.gz
Published: 2025-12-22
Reference Manual: pathfindR.html , pathfindR.pdf
SystemRequirements: Java (>= 8.0)
URL: https://egeulgen.github.io/pathfindR/ , https://github.com/egeulgen/pathfindR
Version: 2.7.0
Vignettes: Comparing Two pathfindR Results ( source , R code ) Introduction to pathfindR ( source , R code ) Step-by-Step Execution of the pathfindR Enrichment Workflow ( source , R code ) pathfindR Analysis for non-Homo-sapiens organisms ( source , R code ) Obtaining PIN and Gene Sets Data ( source , R code ) Visualization of pathfindR Enrichment Results ( source , R code )
Windows Binaries: r-devel: pathfindR_2.7.0.zip , r-release: pathfindR_2.7.0.zip , r-oldrel: pathfindR_2.7.0.zip
MacOS Binaries: r-release (arm64): pathfindR_2.7.0.tgz , r-oldrel (arm64): not available, r-release (x86_64): pathfindR_2.7.0.tgz , r-oldrel (x86_64): pathfindR_2.7.0.tgz

Version

2.7.0

Published

2025-12-22

DOI

10.32614/CRAN.package.pathfindR

Author

Ege Ulgen [cre, cph], Ozan Ozisik [aut]

https://orcid.org/0000-0003-2090-3621 https://orcid.org/0000-0001-5980-8002

Maintainer

Ege Ulgen <egeulgen at gmail.com>

BugReports

https://github.com/egeulgen/pathfindR/issues

License

MIT + file LICENSE

MIT LICENSE

URL

https://egeulgen.github.io/pathfindR/ , https://github.com/egeulgen/pathfindR

https://egeulgen.github.io/pathfindR/https://github.com/egeulgen/pathfindR

NeedsCompilation

SystemRequirements

Java (>= 8.0)

Citation

pathfindR citation info

Materials

NEWS

In Views

Omics

CRAN Checks

pathfindR results

Reference Manual

pathfindR.html , pathfindR.pdf

pathfindR.html pathfindR.pdf

Vignettes

Comparing Two pathfindR Results ( source , R code ) Introduction to pathfindR ( source , R code ) Step-by-Step Execution of the pathfindR Enrichment Workflow ( source , R code ) pathfindR Analysis for non-Homo-sapiens organisms ( source , R code ) Obtaining PIN and Gene Sets Data ( source , R code ) Visualization of pathfindR Enrichment Results ( source , R code )

Comparing Two pathfindR Results source R code Introduction to pathfindR source R code Step-by-Step Execution of the pathfindR Enrichment Workflow source R code pathfindR Analysis for non-Homo-sapiens organisms source R code Obtaining PIN and Gene Sets Data source R code Visualization of pathfindR Enrichment Results source R code

Package Source

pathfindR_2.7.0.tar.gz

Windows Binaries

r-devel: pathfindR_2.7.0.zip , r-release: pathfindR_2.7.0.zip , r-oldrel: pathfindR_2.7.0.zip

pathfindR_2.7.0.zip pathfindR_2.7.0.zip pathfindR_2.7.0.zip

MacOS Binaries

r-release (arm64): pathfindR_2.7.0.tgz , r-oldrel (arm64): not available, r-release (x86_64): pathfindR_2.7.0.tgz , r-oldrel (x86_64): pathfindR_2.7.0.tgz

pathfindR_2.7.0.tgz pathfindR_2.7.0.tgz pathfindR_2.7.0.tgz

Old Sources

pathfindR archive

Page sections 3

Documentation

Heading

Documentation

Links

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Text

Reference manual: pathfindR.html , pathfindR.pdf Vignettes: Comparing Two pathfindR Results ( source , R code ) Introduction to pathfindR ( source , R code ) Step-by-Step Execution of the pathfindR Enrichment Workflow ( source , R code ) pathfindR Analysis for non-Homo-sapiens organisms ( source , R code ) Obtaining PIN and Gene Sets Data ( source , R code ) Visualization of pathfindR Enrichment Results ( source , R code )

Downloads

Heading

Downloads

Links

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Text

Package source: pathfindR_2.7.0.tar.gz Windows binaries: r-devel: pathfindR_2.7.0.zip , r-release: pathfindR_2.7.0.zip , r-oldrel: pathfindR_2.7.0.zip macOS binaries: r-release (arm64): pathfindR_2.7.0.tgz , r-oldrel (arm64): not available, r-release (x86_64): pathfindR_2.7.0.tgz , r-oldrel (x86_64): pathfindR_2.7.0.tgz Old sources: pathfindR archive

Linking

Heading

Linking

Links

[{"label":"https://CRAN.R-project.org/package=pathfindR","section":"","type":"","url":"https://CRAN.R-project.org/package=pathfindR"}]

Text

Please use the canonical form https://CRAN.R-project.org/package=pathfindR to link to this page.

Materials 1

NEWS

Documentation 20

Vignettes 18

Downloads 8

pathfindR_2.7.0.tar.gz pathfindR_2.7.0.zip pathfindR_2.7.0.zip pathfindR_2.7.0.zip pathfindR_2.7.0.tgz pathfindR_2.7.0.tgz pathfindR_2.7.0.tgz pathfindR archive

All page links 62

pathfindR.data DBI AnnotationDbi doParallel foreach rmarkdown ggplot2 ggraph ggupset fpc ggkegg grDevices httr igraph R.utils msigdbr knitr org.Hs.eg.db testthat covr mockery 10.32614/CRAN.package.pathfindR https://orcid.org/0000-0003-2090-3621 https://orcid.org/0000-0001-5980-8002 https://github.com/egeulgen/pathfindR/issues MIT LICENSE https://egeulgen.github.io/pathfindR/https://github.com/egeulgen/pathfindR pathfindR citation info NEWS Omics pathfindR results pathfindR.html pathfindR.pdf Comparing Two pathfindR Results source R code Introduction to pathfindR source R code Step-by-Step Execution of the pathfindR Enrichment Workflow source R code pathfindR Analysis for non-Homo-sapiens organisms source R code Obtaining PIN and Gene Sets Data source R code Visualization of pathfindR Enrichment Results source R code pathfindR_2.7.0.tar.gz pathfindR_2.7.0.zip pathfindR_2.7.0.zip pathfindR_2.7.0.zip pathfindR_2.7.0.tgz pathfindR_2.7.0.tgz pathfindR_2.7.0.tgz pathfindR archive https://CRAN.R-project.org/package=pathfindR

버전 이력

Repository	Version	Published	First seen	Last seen	Docs
CRAN	2.7.0		2026-05-29	2026-05-30

보안

표시할 OSV 데이터가 없습니다.

문헌 신호

표시할 OpenAlex 데이터가 없습니다.

CRAN Task Views

Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics · 2026-05-30