pagoda2

R 패키지 메타데이터와 수집 신호를 모아 봅니다.

Packages / CRAN / pagoda2

pagoda2

v1.0.15
Repository CRANLicense GPL-3Lifecycle activeNeeds compilation yes
Package pageReferenceSourceDOIREADME
DOI
10.32614/CRAN.package.pagoda2
Task views
Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics
Reverse imports
39

Core Signals

첫 화면에서 판단해야 할 수집 신호를 먼저 배치합니다.

2
Task views
Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics
Reverse imports
39

Supported Backends

DESCRIPTION에서 감지한 backend 관련 package입니다.

1
D
data.table
Suggests

Quick Facts

기본 메타데이터를 작은 카드와 토큰으로 압축합니다.

profile
Repository
CRAN
Version
1.0.15
License
GPL-3
Lifecycle
active
Needs compilation
yes
Reverse imports
39
Last observed
2026-05-30
CRAN
cran.r-project.org/package=pagoda2

Build fields

LinkingTo
4
RcppRcppArmadilloRcppProgressRcppEigen

수집 소스별 패키지 정보

1개 소스
CRAN
1.0.15
2026-05-30
License
GPL-3
Depends
R (>= 3.5.0), Matrix, igraph
Imports
dendsort, drat, fastcluster, graphics, grDevices, irlba, magrittr, MASS, mgcv, methods, N2R, parallel, plyr, R.utils, Rcpp, rjson, rlang, R6, RMTstat, Rook, Rtsne, sccore (>= 0.1.1), stats, urltools, utils
Suggests
AnnotationDbi, base64enc, BiocGenerics, BiocParallel, colorRamps, data.table, dbscan, dplyr, ggplot2, GO.db, gridExtra, KernSmooth, knitr, org.Dr.eg.db, org.Hs.eg.db, org.Mm.eg.db, pcaMethods, pheatmap, rgl, rmarkdown, robustbase, scde, testthat, uwot
LinkingTo
Rcpp, RcppArmadillo, RcppProgress, RcppEigen
Needs compilation
yes
Reverse imports
39
Lifecycle
active
Last observed
2026-05-30 10:45:11

이 패키지가 의존하는 패키지

5개 표시전체 55개
PackageTypeSpec
igraph
CRAN · 1.0.15 · 2026-05-30
Dependsigraph
Matrix
CRAN · 1.0.15 · 2026-05-30
DependsMatrix
dendsort
CRAN · 1.0.15 · 2026-05-30
Importsdendsort
drat
CRAN · 1.0.15 · 2026-05-30
Importsdrat
fastcluster
CRAN · 1.0.15 · 2026-05-30
Importsfastcluster
1 / 11

이 패키지를 쓰는 패키지

3개 표시전체 3개
PackageTypeSpec
conos
1.5.4
CRAN · 2026-05-30
Importspagoda2
CRMetrics
0.3.2
CRAN · 2026-05-30
Suggestspagoda2
scITD
1.0.4
CRAN · 2026-05-30
Suggestspagoda2
1 / 1

Reverse dependency summary

2 types
TypePackages
Imports1
Suggests2

패키지 페이지

Reverse imports
4
Reverse suggests
4
All links
69
Repository
CRAN
Version
1.0.15
Collected
2026-05-30 00:14:00
Package page
https://cran.r-project.org/web/packages/pagoda2/index.html
DOI
10.32614/CRAN.package.pagoda2
CRAN checks
https://cran.r-project.org/web/checks/check_results_pagoda2.html
README
https://cran.r-project.org/web/packages/pagoda2/readme/README.html
Reference HTML
https://cran.r-project.org/web/packages/pagoda2/refman/pagoda2.html
Reference PDF
https://cran.r-project.org/web/packages/pagoda2/pagoda2.pdf
Source package
https://cran.r-project.org/src/contrib/pagoda2_1.0.15.tar.gz
Archive
https://CRAN.R-project.org/src/contrib/Archive/pagoda2
In views
Omics
Page fields
Author
Nikolas Barkas [aut], Viktor Petukhov [aut], Peter Kharchenko [aut], Simon Steiger [ctb], Rasmus Rydbirk [ctb], Evan Biederstedt [cre, aut]
BugReports
https://github.com/kharchenkolab/pagoda2/issues
CRAN Checks
pagoda2 results
Copyright
See the file COPYRIGHTS for various pagoda2 copyright details pagoda2 copyright details
DOI
10.32614/CRAN.package.pagoda2
In Views
Omics
License
GPL-3
LinkingTo
Rcpp , RcppArmadillo , RcppProgress , RcppEigen
Maintainer
Evan Biederstedt <evan.biederstedt at gmail.com>
Materials
README
NeedsCompilation
yes
Old Sources
pagoda2 archive
Package Source
pagoda2_1.0.15.tar.gz
Published
2026-03-31
Reference Manual
pagoda2.html , pagoda2.pdf
Reverse Imports
conos , GSABenchmark
Reverse Suggests
CRMetrics , scITD
URL
https://github.com/kharchenkolab/pagoda2
Version
1.0.15
Windows Binaries
r-devel: pagoda2_1.0.15.zip , r-release: pagoda2_1.0.15.zip , r-oldrel: pagoda2_1.0.15.zip
MacOS Binaries
r-release (arm64): pagoda2_1.0.15.tgz , r-oldrel (arm64): pagoda2_1.0.15.tgz , r-release (x86_64): pagoda2_1.0.15.tgz , r-oldrel (x86_64): pagoda2_1.0.15.tgz
Version
1.0.15
LinkingTo
Rcpp , RcppArmadillo , RcppProgress , RcppEigen
RcppRcppArmadilloRcppProgressRcppEigen
Published
2026-03-31
DOI
10.32614/CRAN.package.pagoda2
10.32614/CRAN.package.pagoda2
Author
Nikolas Barkas [aut], Viktor Petukhov [aut], Peter Kharchenko [aut], Simon Steiger [ctb], Rasmus Rydbirk [ctb], Evan Biederstedt [cre, aut]
Maintainer
Evan Biederstedt <evan.biederstedt at gmail.com>
BugReports
https://github.com/kharchenkolab/pagoda2/issues
https://github.com/kharchenkolab/pagoda2/issues
License
GPL-3
GPL-3
Copyright
See the file COPYRIGHTS for various pagoda2 copyright details pagoda2 copyright details
pagoda2 copyright details
URL
https://github.com/kharchenkolab/pagoda2
https://github.com/kharchenkolab/pagoda2
NeedsCompilation
yes
Materials
README
README
In Views
Omics
Omics
CRAN Checks
pagoda2 results
pagoda2 results
Reference Manual
pagoda2.html , pagoda2.pdf
pagoda2.htmlpagoda2.pdf
Package Source
pagoda2_1.0.15.tar.gz
pagoda2_1.0.15.tar.gz
Windows Binaries
r-devel: pagoda2_1.0.15.zip , r-release: pagoda2_1.0.15.zip , r-oldrel: pagoda2_1.0.15.zip
pagoda2_1.0.15.zippagoda2_1.0.15.zippagoda2_1.0.15.zip
MacOS Binaries
r-release (arm64): pagoda2_1.0.15.tgz , r-oldrel (arm64): pagoda2_1.0.15.tgz , r-release (x86_64): pagoda2_1.0.15.tgz , r-oldrel (x86_64): pagoda2_1.0.15.tgz
pagoda2_1.0.15.tgzpagoda2_1.0.15.tgzpagoda2_1.0.15.tgzpagoda2_1.0.15.tgz
Old Sources
pagoda2 archive
pagoda2 archive
Reverse Imports
conos , GSABenchmark
conosGSABenchmark
Reverse Suggests
CRMetrics , scITD
CRMetricsscITD
Page sections 4
Documentation
Heading
Documentation
Links
[{"label":"pagoda2.html","section":"","type":"","url":"https://cran.r-project.org/web/packages/pagoda2/refman/pagoda2.html"},{"label":"pagoda2.pdf","section":"","type":"","url":"https://cran.r-project.org/web/packages/pagoda2/pagoda2.pdf"}]
Text
Reference manual: pagoda2.html , pagoda2.pdf
Downloads
Heading
Downloads
Links
[{"label":"pagoda2_1.0.15.tar.gz","section":"","type":"","url":"https://cran.r-project.org/src/contrib/pagoda2_1.0.15.tar.gz"},{"label":"pagoda2_1.0.15.zip","section":"","type":"","url":"https://cran.r-project.org/bin/windows/contrib/4.7/pagoda2_1.0.15.zip"},{"label":"pagoda2_1.0.15.zip","section":"","type":"","url":"https://cran.r-project.org/bin/windows/contrib/4.6/pagoda2_1.0.15.zip"},{"label":"pagoda2_1.0.15.zip","section":"","type":"","url":"https://cran.r-project.org/bin/windows/contrib/4.5/pagoda2_1.0.15.zip"},{"label":"pagoda2_1.0.15.tgz","section":"","type":"","url":"https://cran.r-project.org/bin/macosx/sonoma-arm64/contrib/4.6/pagoda2_1.0.15.tgz"},{"label":"pagoda2_1.0.15.tgz","section":"","type":"","url":"https://cran.r-project.org/bin/macosx/big-sur-arm64/contrib/4.5/pagoda2_1.0.15.tgz"},{"label":"pagoda2_1.0.15.tgz","section":"","type":"","url":"https://cran.r-project.org/bin/macosx/big-sur-x86_64/contrib/4.6/pagoda2_1.0.15.tgz"},{"label":"pagoda2_1.0.15.tgz","section":"","type":"","url":"https://cran.r-project.org/bin/macosx/big-sur-x86_64/contrib/4.5/pagoda2_1.0.15.tgz"},{"label":"pagoda2 archive","section":"","type":"","url":"https://CRAN.R-project.org/src/contrib/Archive/pagoda2"}]
Text
Package source: pagoda2_1.0.15.tar.gz Windows binaries: r-devel: pagoda2_1.0.15.zip , r-release: pagoda2_1.0.15.zip , r-oldrel: pagoda2_1.0.15.zip macOS binaries: r-release (arm64): pagoda2_1.0.15.tgz , r-oldrel (arm64): pagoda2_1.0.15.tgz , r-release (x86_64): pagoda2_1.0.15.tgz , r-oldrel (x86_64): pagoda2_1.0.15.tgz Old sources: pagoda2 archive
Reverse dependencies
Heading
Reverse dependencies
Links
[{"label":"conos","section":"","type":"","url":"https://cran.r-project.org/web/packages/conos/index.html"},{"label":"GSABenchmark","section":"","type":"","url":"https://www.bioconductor.org/packages/release/bioc/html/GSABenchmark.html"},{"label":"CRMetrics","section":"","type":"","url":"https://cran.r-project.org/web/packages/CRMetrics/index.html"},{"label":"scITD","section":"","type":"","url":"https://cran.r-project.org/web/packages/scITD/index.html"}]
Text
Reverse imports: conos , GSABenchmark Reverse suggests: CRMetrics , scITD
Linking
Heading
Linking
Links
[{"label":"https://CRAN.R-project.org/package=pagoda2","section":"","type":"","url":"https://CRAN.R-project.org/package=pagoda2"}]
Text
Please use the canonical form https://CRAN.R-project.org/package=pagoda2 to link to this page.
Materials 1
README
Documentation 2
pagoda2.htmlpagoda2.pdf
Downloads 9
pagoda2_1.0.15.tar.gzpagoda2_1.0.15.zippagoda2_1.0.15.zippagoda2_1.0.15.zippagoda2_1.0.15.tgzpagoda2_1.0.15.tgzpagoda2_1.0.15.tgzpagoda2_1.0.15.tgzpagoda2 archive
All page links 69
MatrixigraphdendsortdratfastclustergraphicsgrDevicesirlbamagrittrMASSmgcvmethodsN2RparallelplyrR.utilsRcpprjsonrlangR6RMTstatRookRcppArmadilloRcppProgressRcppEigenAnnotationDbibase64encBiocGenericsBiocParallelcolorRampsdata.tabledbscandplyrggplot2GO.dbgridExtraKernSmoothknitrorg.Dr.eg.dborg.Hs.eg.dborg.Mm.eg.dbpcaMethodspheatmaprglrmarkdown10.32614/CRAN.package.pagoda2https://github.com/kharchenkolab/pagoda2/issuesGPL-3pagoda2 copyright detailshttps://github.com/kharchenkolab/pagoda2READMEOmicspagoda2 resultspagoda2.htmlpagoda2.pdfpagoda2_1.0.15.tar.gzpagoda2_1.0.15.zippagoda2_1.0.15.zippagoda2_1.0.15.zippagoda2_1.0.15.tgzpagoda2_1.0.15.tgzpagoda2_1.0.15.tgzpagoda2_1.0.15.tgzpagoda2 archiveconosGSABenchmarkCRMetricsscITDhttps://CRAN.R-project.org/package=pagoda2

버전 이력

RepositoryVersionPublishedFirst seenLast seenDocs
CRAN1.0.152026-05-292026-05-30

보안

표시할 OSV 데이터가 없습니다.

문헌 신호

표시할 OpenAlex 데이터가 없습니다.

CRAN Task Views

Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics · 2026-05-30