phangorn

R 패키지 메타데이터와 수집 신호를 모아 봅니다.

Packages / CRAN / phangorn

phangorn

v2.12.1
Repository CRANLicense GPL (>= 2)Lifecycle activeNeeds compilation yes
Package pageReferenceSourceDOIREADMENEWS
DOI
10.32614/CRAN.package.phangorn
Task views
Phylogenetics
Reverse imports
1,626
Reverse depends
118

Core Signals

첫 화면에서 판단해야 할 수집 신호를 먼저 배치합니다.

3
Task views
Phylogenetics
Reverse imports
1,626
Reverse depends
118

Supported Backends

DESCRIPTION에서 감지한 backend 관련 package입니다.

0
backend package 신호가 없습니다.

Quick Facts

기본 메타데이터를 작은 카드와 토큰으로 압축합니다.

profile
Repository
CRAN
Version
2.12.1
License
GPL (>= 2)
Lifecycle
active
Needs compilation
yes
Reverse depends
118
Reverse imports
1,626
Last observed
2026-05-30
CRAN
cran.r-project.org/package=phangorn

Build fields

LinkingTo
1
Rcpp

수집 소스별 패키지 정보

1개 소스
CRAN
2.12.1
2026-05-30
License
GPL (>= 2)
Depends
ape (>= 5.8), R (>= 4.1.0)
Imports
digest, fastmatch, generics, graphics, grDevices, igraph (>= 1.0), Matrix, methods, parallel, quadprog, Rcpp, stats, utils
Suggests
apex, Biostrings, ggseqlogo, ggplot2, knitr, magick, rgl, rmarkdown, seqinr, testthat (>= 3.0.0), tinytest, vdiffr, xtable
LinkingTo
Rcpp
Needs compilation
yes
Reverse depends
118
Reverse imports
1,626
Lifecycle
active
Last observed
2026-05-30 10:45:11

이 패키지가 의존하는 패키지

5개 표시전체 28개
PackageTypeSpec
ape
CRAN · 2.12.1 · 2026-05-30
Dependsape (>= 5.8)
digest
CRAN · 2.12.1 · 2026-05-30
Importsdigest
fastmatch
CRAN · 2.12.1 · 2026-05-30
Importsfastmatch
generics
CRAN · 2.12.1 · 2026-05-30
Importsgenerics
graphics
CRAN · 2.12.1 · 2026-05-30
Importsgraphics
1 / 6

이 패키지를 쓰는 패키지

5개 표시전체 60개
PackageTypeSpec
apex
1.0.7
CRAN · 2026-05-30
Dependsphangorn
MSCquartets
3.3
CRAN · 2026-05-30
Dependsphangorn
windex
2.1.0
CRAN · 2026-05-30
Dependsphangorn
babette
2.3.4
CRAN · 2026-05-30
Importsphangorn
beastier
2.5.2
CRAN · 2026-05-30
Importsphangorn
1 / 12

Reverse dependency summary

4 types
TypePackages
Depends3
Imports42
Suggests14
Enhances1

패키지 페이지

Reverse depends
6
Reverse imports
92
Reverse suggests
36
Reverse enhances
2
All links
143
Repository
CRAN
Version
2.12.1
Collected
2026-05-15 15:15:18
Package page
https://cran.r-project.org/web/packages/phangorn/index.html
DOI
10.32614/CRAN.package.phangorn
Citation
https://cran.r-project.org/web/packages/phangorn/citation.html
CRAN checks
https://cran.r-project.org/web/checks/check_results_phangorn.html
README
https://cran.r-project.org/web/packages/phangorn/readme/README.html
NEWS
https://cran.r-project.org/web/packages/phangorn/NEWS
Reference HTML
https://cran.r-project.org/web/packages/phangorn/refman/phangorn.html
Reference PDF
https://cran.r-project.org/web/packages/phangorn/phangorn.pdf
Source package
https://cran.r-project.org/src/contrib/phangorn_2.12.1.tar.gz
Archive
https://CRAN.R-project.org/src/contrib/Archive/phangorn
In views
Phylogenetics
Page fields
Author
Klaus Schliep [aut, cre], Emmanuel Paradis [aut], Leonardo de Oliveira Martins [aut], Alastair Potts [aut], Iris Bardel-Kahr [aut], Tim W. White [ctb], Cyrill Stachniss [ctb], Michelle Kendall [ctb], Keren Halabi [ctb], Richel Bilderbeek [ctb], Kristin Winchell [ctb], Liam Revell [ctb], Mike Gilchrist [ctb], Jeremy Beaulieu [ctb], Brian O'Meara [ctb], Long Qu [ctb], Joseph Brown [ctb], Santiago Claramunt [ctb]
BugReports
https://github.com/KlausVigo/phangorn/issues
CRAN Checks
phangorn results
Citation
phangorn citation info
DOI
10.32614/CRAN.package.phangorn
In Views
Phylogenetics
Language
en-US
License
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
LinkingTo
Rcpp
Maintainer
Klaus Schliep <klaus.schliep at gmail.com>
Materials
README , NEWS
NeedsCompilation
yes
Old Sources
phangorn archive
Package Source
phangorn_2.12.1.tar.gz
Published
2024-09-17
Reference Manual
phangorn.html , phangorn.pdf
Reverse Depends
apex , MSCquartets , windex
Reverse Enhances
dendextend
Reverse Imports
babette , beastier , bioregion , BoSSA , BSS , coalescentMCMC , corHMM , DCLEAR , dispRity , dowser , DspikeIn , EnvNJ , EvoPhylo , genBaRcode , haplotypes , hisse , indelmiss , ips , LDM , LymphoSeq , markophylo , MesKit , microbial , MonoPhy , MorphSim , nodeSub , orthGS , OUwie , paleotree , pcmabc , philr , phyloregion , phytools , POMS , ppgm , rapidphylo , recluster , rwty , scistreer , SeqFeatR , sketching , STraTUS , tanggle , taxize , TML , treespace
Reverse Suggests
AntibodyForests , ape , compcodeR , CongreveLamsdell2016 , immunarch , mcbette , MicrobiotaProcess , MiscMetabar , msa , Quartet , RevGadgets , RRphylo , tracerer , TreeDist , treeio , TreeSearch , treestructure , TreeTools
URL
https://github.com/KlausVigo/phangorn , https://klausvigo.github.io/phangorn/
Version
2.12.1
Vignettes
Markov models and transition rate matrices ( source , R code ) Ancestral Sequence Reconstruction ( source , R code ) Intertwining phylogenetic trees and networks: R Example Script ( source , R code ) Maximum likelihood by hand ( source , R code ) Phylogenetic trees from morphological data ( source , R code ) Splits and Networx ( source , R code ) Estimating phylogenetic trees with phangorn ( source , R code )
Windows Binaries
r-devel: phangorn_2.12.1.zip , r-release: phangorn_2.12.1.zip , r-oldrel: phangorn_2.12.1.zip
MacOS Binaries
r-release (arm64): phangorn_2.12.1.tgz , r-oldrel (arm64): phangorn_2.12.1.tgz , r-release (x86_64): phangorn_2.12.1.tgz , r-oldrel (x86_64): phangorn_2.12.1.tgz
Version
2.12.1
LinkingTo
Rcpp
Rcpp
Published
2024-09-17
DOI
10.32614/CRAN.package.phangorn
10.32614/CRAN.package.phangorn
Author
Klaus Schliep [aut, cre], Emmanuel Paradis [aut], Leonardo de Oliveira Martins [aut], Alastair Potts [aut], Iris Bardel-Kahr [aut], Tim W. White [ctb], Cyrill Stachniss [ctb], Michelle Kendall [ctb], Keren Halabi [ctb], Richel Bilderbeek [ctb], Kristin Winchell [ctb], Liam Revell [ctb], Mike Gilchrist [ctb], Jeremy Beaulieu [ctb], Brian O'Meara [ctb], Long Qu [ctb], Joseph Brown [ctb], Santiago Claramunt [ctb]
https://orcid.org/0000-0003-2941-0161https://orcid.org/0000-0003-3092-2199https://orcid.org/0000-0001-5247-1320https://orcid.org/0000-0002-8950-834Xhttps://orcid.org/0000-0002-3835-8062https://orcid.org/0000-0002-8926-5974
Maintainer
Klaus Schliep <klaus.schliep at gmail.com>
BugReports
https://github.com/KlausVigo/phangorn/issues
https://github.com/KlausVigo/phangorn/issues
License
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
GPL-2GPL-3
URL
https://github.com/KlausVigo/phangorn , https://klausvigo.github.io/phangorn/
https://github.com/KlausVigo/phangornhttps://klausvigo.github.io/phangorn/
NeedsCompilation
yes
Language
en-US
Citation
phangorn citation info
phangorn citation info
Materials
README , NEWS
READMENEWS
In Views
Phylogenetics
Phylogenetics
CRAN Checks
phangorn results
phangorn results
Reference Manual
phangorn.html , phangorn.pdf
phangorn.htmlphangorn.pdf
Vignettes
Markov models and transition rate matrices ( source , R code ) Ancestral Sequence Reconstruction ( source , R code ) Intertwining phylogenetic trees and networks: R Example Script ( source , R code ) Maximum likelihood by hand ( source , R code ) Phylogenetic trees from morphological data ( source , R code ) Splits and Networx ( source , R code ) Estimating phylogenetic trees with phangorn ( source , R code )
Markov models and transition rate matricessourceR codeAncestral Sequence ReconstructionsourceR codeIntertwining phylogenetic trees and networks: R Example ScriptsourceR codeMaximum likelihood by handsourceR codePhylogenetic trees from morphological datasourceR codeSplits and NetworxsourceR codeEstimating phylogenetic trees with phangornsource
Package Source
phangorn_2.12.1.tar.gz
phangorn_2.12.1.tar.gz
Windows Binaries
r-devel: phangorn_2.12.1.zip , r-release: phangorn_2.12.1.zip , r-oldrel: phangorn_2.12.1.zip
phangorn_2.12.1.zipphangorn_2.12.1.zipphangorn_2.12.1.zip
MacOS Binaries
r-release (arm64): phangorn_2.12.1.tgz , r-oldrel (arm64): phangorn_2.12.1.tgz , r-release (x86_64): phangorn_2.12.1.tgz , r-oldrel (x86_64): phangorn_2.12.1.tgz
phangorn_2.12.1.tgzphangorn_2.12.1.tgzphangorn_2.12.1.tgzphangorn_2.12.1.tgz
Old Sources
phangorn archive
phangorn archive
Reverse Depends
apex , MSCquartets , windex
apexMSCquartetswindex
Reverse Imports
babette , beastier , bioregion , BoSSA , BSS , coalescentMCMC , corHMM , DCLEAR , dispRity , dowser , DspikeIn , EnvNJ , EvoPhylo , genBaRcode , haplotypes , hisse , indelmiss , ips , LDM , LymphoSeq , markophylo , MesKit , microbial , MonoPhy , MorphSim , nodeSub , orthGS , OUwie , paleotree , pcmabc , philr , phyloregion , phytools , POMS , ppgm , rapidphylo , recluster , rwty , scistreer , SeqFeatR , sketching , STraTUS , tanggle , taxize , TML , treespace
babettebeastierbioregionBoSSABSScoalescentMCMCcorHMMDCLEARdispRitydowserDspikeInEnvNJEvoPhylogenBaRcodehaplotypeshisseindelmissipsLDMLymphoSeq
Reverse Suggests
AntibodyForests , ape , compcodeR , CongreveLamsdell2016 , immunarch , mcbette , MicrobiotaProcess , MiscMetabar , msa , Quartet , RevGadgets , RRphylo , tracerer , TreeDist , treeio , TreeSearch , treestructure , TreeTools
AntibodyForestsapecompcodeRCongreveLamsdell2016immunarchmcbetteMicrobiotaProcessMiscMetabarmsaQuartetRevGadgetsRRphylotracererTreeDisttreeioTreeSearchtreestructureTreeTools
Reverse Enhances
dendextend
dendextend
Page sections 4
Documentation
Heading
Documentation
Links
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Text
Reference manual: phangorn.html , phangorn.pdf Vignettes: Markov models and transition rate matrices ( source , R code ) Ancestral Sequence Reconstruction ( source , R code ) Intertwining phylogenetic trees and networks: R Example Script ( source , R code ) Maximum likelihood by hand ( source , R code ) Phylogenetic trees from morphological data ( source , R code ) Splits and Networx ( source , R code ) Estimating phylogenetic trees with phangorn ( source , R code )
Downloads
Heading
Downloads
Links
[{"label":"phangorn_2.12.1.tar.gz","section":"","type":"","url":"https://cran.r-project.org/src/contrib/phangorn_2.12.1.tar.gz"},{"label":"phangorn_2.12.1.zip","section":"","type":"","url":"https://cran.r-project.org/bin/windows/contrib/4.7/phangorn_2.12.1.zip"},{"label":"phangorn_2.12.1.zip","section":"","type":"","url":"https://cran.r-project.org/bin/windows/contrib/4.6/phangorn_2.12.1.zip"},{"label":"phangorn_2.12.1.zip","section":"","type":"","url":"https://cran.r-project.org/bin/windows/contrib/4.5/phangorn_2.12.1.zip"},{"label":"phangorn_2.12.1.tgz","section":"","type":"","url":"https://cran.r-project.org/bin/macosx/sonoma-arm64/contrib/4.6/phangorn_2.12.1.tgz"},{"label":"phangorn_2.12.1.tgz","section":"","type":"","url":"https://cran.r-project.org/bin/macosx/big-sur-arm64/contrib/4.5/phangorn_2.12.1.tgz"},{"label":"phangorn_2.12.1.tgz","section":"","type":"","url":"https://cran.r-project.org/bin/macosx/big-sur-x86_64/contrib/4.6/phangorn_2.12.1.tgz"},{"label":"phangorn_2.12.1.tgz","section":"","type":"","url":"https://cran.r-project.org/bin/macosx/big-sur-x86_64/contrib/4.5/phangorn_2.12.1.tgz"},{"label":"phangorn archive","section":"","type":"","url":"https://CRAN.R-project.org/src/contrib/Archive/phangorn"}]
Text
Package source: phangorn_2.12.1.tar.gz Windows binaries: r-devel: phangorn_2.12.1.zip , r-release: phangorn_2.12.1.zip , r-oldrel: phangorn_2.12.1.zip macOS binaries: r-release (arm64): phangorn_2.12.1.tgz , r-oldrel (arm64): phangorn_2.12.1.tgz , r-release (x86_64): phangorn_2.12.1.tgz , r-oldrel (x86_64): phangorn_2.12.1.tgz Old sources: phangorn archive
Reverse dependencies
Heading
Reverse dependencies
Links
[{"label":"apex","section":"","type":"","url":"https://cran.r-project.org/web/packages/apex/index.html"},{"label":"MSCquartets","section":"","type":"","url":"https://cran.r-project.org/web/packages/MSCquartets/index.html"},{"label":"windex","section":"","type":"","url":"https://cran.r-project.org/web/packages/windex/index.html"},{"label":"babette","section":"","type":"","url":"https://cran.r-project.org/web/packages/babette/index.html"},{"label":"beastier","section":"","type":"","url":"https://cran.r-project.org/web/packages/beastier/index.html"},{"label":"bioregion","section":"","type":"","url":"https://cran.r-project.org/web/packages/bioregion/index.html"},{"label":"BoSSA","section":"","type":"","url":"https://cran.r-project.org/web/packages/BoSSA/index.html"},{"label":"BSS","section":"","type":"","url":"https://cran.r-project.org/web/packages/BSS/index.html"},{"label":"coalescentMCMC","section":"","type":"","url":"https://cran.r-project.org/web/packages/coalescentMCMC/index.html"},{"label":"corHMM","section":"","type":"","url":"https://cran.r-project.org/web/packages/corHMM/index.html"},{"label":"DCLEAR","section":"","type":"","url":"https://cran.r-project.org/web/packages/DCLEAR/index.html"},{"label":"dispRity","section":"","type":"","url":"https://cran.r-project.org/web/packages/dispRity/index.html"},{"label":"dowser","section":"","type":"","url":"https://cran.r-project.org/web/packages/dowser/index.html"},{"label":"DspikeIn","section":"","type":"","url":"https://www.bioconductor.org/packages/release/bioc/html/DspikeIn.html"},{"label":"EnvNJ","section":"","type":"","url":"https://cran.r-project.org/web/packages/EnvNJ/index.html"},{"label":"EvoPhylo","section":"","type":"","url":"https://cran.r-project.org/web/packages/EvoPhylo/index.html"},{"label":"genBaRcode","section":"","type":"","url":"https://cran.r-project.org/web/packages/genBaRcode/index.html"},{"label":"haplotypes","section":"","type":"","url":"https://cran.r-project.org/web/packages/haplotypes/index.html"},{"label":"hisse","section":"","type":"","url":"https://cran.r-project.org/web/packages/hisse/index.html"},{"label":"indelmiss","section":"","type":"","url":"https://cran.r-project.org/web/packages/indelmiss/index.html"}]
Text
Reverse depends: apex , MSCquartets , windex Reverse imports: babette , beastier , bioregion , BoSSA , BSS , coalescentMCMC , corHMM , DCLEAR , dispRity , dowser , DspikeIn , EnvNJ , EvoPhylo , genBaRcode , haplotypes , hisse , indelmiss , ips , LDM , LymphoSeq , markophylo , MesKit , microbial , MonoPhy , MorphSim , nodeSub , orthGS , OUwie , paleotree , pcmabc , philr , phyloregion , phytools , POMS , ppgm , rapidphylo , recluster , rwty , scistreer , SeqFeatR , sketching , STraTUS , tanggle , taxize , TML , treespace Reverse suggests: AntibodyForests , ape , compcodeR , CongreveLamsdell2016 , immunarch , mcbette , MicrobiotaProcess , MiscMetabar , msa , Quartet , RevGadgets , RRphylo , tracerer , TreeDist , treeio , TreeSearch , treestructure , TreeTools Reverse enhances: dendextend
Linking
Heading
Linking
Links
[{"label":"https://CRAN.R-project.org/package=phangorn","section":"","type":"","url":"https://CRAN.R-project.org/package=phangorn"}]
Text
Please use the canonical form https://CRAN.R-project.org/package=phangorn to link to this page.
Materials 2
READMENEWS
Documentation 23
phangorn.htmlphangorn.pdfMarkov models and transition rate matricessourceR codeAncestral Sequence ReconstructionsourceR codeIntertwining phylogenetic trees and networks: R Example ScriptsourceR codeMaximum likelihood by handsourceR codePhylogenetic trees from morphological datasourceR codeSplits and NetworxsourceR codeEstimating phylogenetic trees with phangornsourceR code
Vignettes 21
Markov models and transition rate matricessourceR codeAncestral Sequence ReconstructionsourceR codeIntertwining phylogenetic trees and networks: R Example ScriptsourceR codeMaximum likelihood by handsourceR codePhylogenetic trees from morphological datasourceR codeSplits and NetworxsourceR codeEstimating phylogenetic trees with phangornsourceR code
Downloads 9
phangorn_2.12.1.tar.gzphangorn_2.12.1.zipphangorn_2.12.1.zipphangorn_2.12.1.zipphangorn_2.12.1.tgzphangorn_2.12.1.tgzphangorn_2.12.1.tgzphangorn_2.12.1.tgzphangorn archive
All page links 120
apedigestfastmatchgenericsgraphicsgrDevicesigraphMatrixmethodsparallelquadprogRcppstatsutilsapexBiostringsggseqlogoggplot2knitrmagickrglrmarkdownseqinrtestthattinytestvdiffrxtable10.32614/CRAN.package.phangornhttps://orcid.org/0000-0003-2941-0161https://orcid.org/0000-0003-3092-2199https://orcid.org/0000-0001-5247-1320https://orcid.org/0000-0002-8950-834Xhttps://orcid.org/0000-0002-3835-8062https://orcid.org/0000-0002-8926-5974https://github.com/KlausVigo/phangorn/issuesGPL-2GPL-3https://github.com/KlausVigo/phangornhttps://klausvigo.github.io/phangorn/phangorn citation infoREADMENEWSPhylogeneticsphangorn resultsphangorn.htmlphangorn.pdfMarkov models and transition rate matricessourceR codeAncestral Sequence ReconstructionsourceR codeIntertwining phylogenetic trees and networks: R Example ScriptsourceR codeMaximum likelihood by handsourceR codePhylogenetic trees from morphological datasourceR codeSplits and NetworxsourceR codeEstimating phylogenetic trees with phangornsourcephangorn_2.12.1.tar.gzphangorn_2.12.1.zipphangorn_2.12.1.zipphangorn_2.12.1.zipphangorn_2.12.1.tgzphangorn_2.12.1.tgzphangorn_2.12.1.tgzphangorn_2.12.1.tgzphangorn archiveMSCquartetswindexbabettebeastierbioregionBoSSABSScoalescentMCMCcorHMMDCLEARdispRitydowserDspikeInEnvNJEvoPhylogenBaRcodehaplotypeshisseindelmissipsLDMLymphoSeqAntibodyForestscompcodeRCongreveLamsdell2016immunarchmcbetteMicrobiotaProcessMiscMetabarmsaQuartetRevGadgetsRRphylotracererTreeDisttreeioTreeSearchtreestructureTreeToolsdendextendR codemarkophyloMesKitmicrobialMonoPhy

버전 이력

RepositoryVersionPublishedFirst seenLast seenDocs
CRAN2.12.12026-05-272026-05-30

보안

표시할 OSV 데이터가 없습니다.

문헌 신호

표시할 OpenAlex 데이터가 없습니다.

CRAN Task Views

Phylogenetics · 2026-05-30